Introduction to Workflows in the Cloud 2025

This one-day course aims to introduce the knowledge, resources, and methods necessary to run high-performace bioinformatics workflows at the level of the individual researcher; be they scientific faculty, educators, or motivated students.

May 2nd, 2025
MDI Biological Laboratory

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Workshop Focus

nf-core/rnaseq
workflow standardization
computing access
cloud infrastructure

The Dataset

Rollins JA, Shaffer D, Snow SS, Kapahi P, Rogers AN. Dietary restriction induces posttranscriptional regulation of longevity genes. Life Sci Alliance 2019 Aug;2(4). doi: 10.26508/lsa.201800281. PMID: 31253655

Paper Data

Tentative Schedule

May 2

Time	Activity
9:00-9:15 AM	Welcome and Introduction
9:15-9:30 AM	Overview/Agenda
9:30-10:15 AM	Workflow/Pipelines
10:15-10:30 PM	Experiment Overview
10:30-10:45 PM	nf-core RNAseq Pipeline Setup & Launch
10:45 AM-11:15 PM	nf-core & Nextflow
11:15-11:45 AM	Amazon Web Services
11:45-12:30 AM	Memverge (OpCenter)
12:30-1:30 PM	Lunch
1:30-2:00 PM	Questions/Issues/Discussion
2:00-3:00 PM	Pipeline Outputs Exploration
3:00-4:00 PM	Discussion of Various Individual Use Cases/ Other Pieplines Output Prebake
4:00-4:30 PM	Resources for Further Interest/Deeper Detail

Tuition

Free

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