Archived Course

This course concluded in April 2024. The website is preserved for educational reference. Please contact our educational office if you are interested in a re-run of this course.

Introduction to Workflows in the Cloud 2024

This one-day course aims to introduce the knowledge, resources, and methods necessary to run high-performace bioinformatics workflows at the level of the individual researcher; be they scientific faculty, educators, or motivated students.

April 25, 2024
MDI Biological Laboratory

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Workshop Focus

nf-core/rnaseq
workflow standardization
computing access
cloud infrastructure

The Dataset

Rollins JA, Shaffer D, Snow SS, Kapahi P, Rogers AN. Dietary restriction induces posttranscriptional regulation of longevity genes. Life Sci Alliance 2019 Aug;2(4). doi: 10.26508/lsa.201800281. PMID: 31253655

Paper Data

Schedule

April 25

Time	Activity
9:00-9:15	Welcome and Introduction
9:15-9:30	Overview/Agenda
9:30-10:15	Workflow/Pipelines
10:15-11:00	Amazon Web Services
11:00-12:00	Memverge/Nextflow
12:00-1:00	NF-Core RNAseq Pipeline Setup & Launch
1:00-2:00	Lunch
2:00-2:30	Questions/Issues/Discussion
2:30-3:30	Pipeline Outputs Exploration
3:30-4:30	Discussion of Various Individual Use Cases
4:30-5:00	Resources for Further Interest/Deeper Detail

Tuition

There is no cost for attending this course.